The Bond-centric Manipulate Tool allows users to adjust the bonds and angles between molecules while the Manipulate Tool adjusts the molecules themselves. The Draw Tool is used to draw and adjust molecules in the 3D model while the Navigate Tool lets users view the model by panning, rotating, and scaling across the window. There are nine main tools for creating the 3D molecule models: Draw, Navigate, Bond-centric Manipulate, Manipulate, Selection, Auto-rotate, Auto-optimize, Measure, and Align. Editing ToolsĪvogadro's editing tools are very intuitive and easy to use. Finally, the 3D graphic can be viewed in the preview window opposite of the options panel. Additional options for each tool will be displayed at the options panel on the left side of the app window. The toolbar contains the editing tools you will need to create 3D graphics of molecules. Avogadro has a simple interface that is composed only of a toolbar, preview window, and options panel.
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